Ami's internal turmoil was noted. It was a different sense having to deal with a civilian rather than a soldier. Truth be told, if Ami told her she was a soldier, she would probably not believe it. She was too emotional, that wasn't very good for the battle field.

"Why would I need to do that, you're saying Chief was somehow transported to another dimension without me noticing it?"

Such theories had never been continued after the discovery of hyper-speed. So many hypothesis had been debunked and it was pointless to many, the curiosity of uncharted space had become far more interesting than being able to break the time continuum. That didn't mean she didn't know what information there was on the subject, because as a processing unit, she knew all. She couldn't comprehend how John could have somehow moved through space without her. She was always with him. Clearly, the information she had was limited.